Cognitive Neurophysiology Laboratory

CNL Wiki

Docs: Electrode Localization Outputs

Updated on October 23, 2023

Tabular Data #

Final Localizations Table #
Fig. 1: Final localizations table
File Save Locations #
CNL Server #

/10.44.239.160/ImagingData/BIDS/derivatives/pipelines/cnl_elec_loc/sub-[sub]_localizations.xlsx

Hoffman #

/[hoffman]/data/PATIENT_DATABASE/Patient[sub]/sub-[sub]_localizations.xlsx

/[hoffman]/data/PATIENT_DATABASE/Patient[sub]/electrodeLocalizations.mat

Workflows #
LeGUI  #
Fig. 2: LeGUI workflow output columns
ASHS #
Fig. 3: ASHS workflow output columns
FreeSurfer #
Fig. 4: FreeSurfer workflow output columns
Column Information #
columninfonotes
electrodeelectrode contact 
regionshaft namenot always aligned to localizations
isMicroboolean, micro or macro  
grayWhiteGM or WM 
MNI_xyzMNI coordinates (mm) ICBM152 template (Mazziotta et al., 2001)
Raw_xyzT1w-space coordinates(mm)sub-[sub]_space-legui_T1w.nii.gz
NMMneuromorphometrics altas 
AnatSPM12-derived atlasnot very reliable
AnatMacro_1SPM12-derived atlasnot very reliable
AnatMacro_2SPM12-derived atlasnot very reliable
ASHS_ABCASHS ABC 3T 1.0.0 atlasBerron et al., 2017
ashs_borderneighboring atlas voxel(s)shared edge or vertex
ASHS_xyzASHS coordinates (mm) 
FS_vox_xyzFreeSurfer 7.3.2 coordinates (vox) 
aparc+asegFreeSurfer 7.3.2 Desikan-Killiany (DK) atlas 
aparc.a2009s+asegFreeSurfer 7.3.2 Destrieux atlas 
aparc.DKTatlas+asegFreeSurfer 7.3.2 Desikan-Killiany-Tourville (DKT) atlas 
wmparcFreeSurfer 7.3.2 white matter parcellations 

Imaging Data #

Workflows #
LeGUI  #
ASHS #
FreeSurfer #